PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02060.1.g00070.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 444aa    MW: 46938.1 Da    PI: 8.1588
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02060.1.g00070.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.42.3e-26265323259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                   +D ++WrKYGqK++kgs++pr+YY+C+s  gC+++k vers   p v+++tY  eH h+
  Zpz_sc02060.1.g00070.1.am.mk 265 SDPWAWRKYGQKPIKGSPYPRGYYKCSSMkGCMARKLVERSPAKPGVLIVTYMAEHCHP 323
                                   799***********************9988***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182904.71E-24263325IPR003657WRKY domain
SMARTSM007743.6E-31264324IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-26264325IPR003657WRKY domain
PROSITE profilePS5081129.126265325IPR003657WRKY domain
PfamPF031063.1E-22266323IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MPCSSVQIPA QSFILPRPPC PPLEVDFLLV PSGPFCTIGR RASPDPAGLR LDQRQKSTLL  60
PPSLAEHASS HPRSSRVKGW LGSSRRAFMR GPLLLVSMES FNDWDLQAVV RSCSFAHAEE  120
PAGAPRAAAA PVRDVAAAQE RRAPVVRAAA PVPVPGRASA AAGVVVKQEA SSSRMHGLEY  180
LDLDHKPFLL PPSATTAAAS RAGDDVREVM ISFPAASTSG AQSRAVPPGR NKAGPRTPRP  240
KRSKKSQLKK VVREMPVADG GVSASDPWAW RKYGQKPIKG SPYPRGYYKC SSMKGCMARK  300
LVERSPAKPG VLIVTYMAEH CHPVPTQLNA LAGTTRHTKS ASAATAAEDR PAASSPKSHE  360
QQGPVSDEAA RCDAADSNEA STAPVAAVEC GGTEEAAAAL ADDDGEFLPA GMDLDELLAT  420
VDDDFDFEPV PDDDDGVLGR RLSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-152663251977Probable WRKY transcription factor 4
2lex_A5e-152663251977Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1114161e-108AK111416.1 Oryza sativa Japonica Group cDNA clone:002-182-G03, full insert sequence.
GenBankAY8706011e-108AY870601.1 Oryza sativa (japonica cultivar-group) WRKY12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458190.11e-122hypothetical protein SORBIDRAFT_03g028440
TrEMBLC5XEC41e-121C5XEC4_SORBI; Putative uncharacterized protein Sb03g028440
STRINGSb03g028440.11e-121(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42793070
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.11e-34WRKY family protein